Existing Bioinformatics Workflows

A github page maintained by Peter Amstutz and others provides you with comprehensive list of existing bioinformatics workflows. It includes -

Taverna

Galaxy

SHIWA

Oozie

DNANexus

BioDT

Agave

DiscoveryEnvironment

Wings

Knime

Snakemake

BPipe

Ruffus

NextFlow

Luigi

GATK Queue

Yabi

seqware

Ketrew

Pegasus

Airflow

Cosmos

Pinball

bcbio

Chronos

Azkaban

Apache NiFi

flowr (R-based)

Mistral

nipype

End of Day

BioDSL

BigDataScript

Omics Pipe

Uses Ruffus

Ensembl Hive

QuickNGS

GenePattern

Chipster

The Genome Modeling System

Cuneiform, A Functional Workflow Language

Anvaya

Makeflow

Airavata

Pyflow

Clusterflow

Unipro UGENE

CloudSlang

Stacks

Leaf

Enjoy !